First working version

http://h005764.hci.utah.edu

The first working version of DAS/2 client incorporated into Galaxy. Now I can download data from DAS/2 server into Galaxy's working environment directly. There are still some trivial problems to fix but the basic pipeline is done.

To do list:

1. Setup the Genopub based DAS/2 server on my virtual machine.(Now this stuck on the Tomcat startup. Will try to fix this ASAP since it is necessary to start DAS/2 server).

2. MySQL database setup to load genome data.

3. Modify the source code & protocol of DAS/2 server to allow "segments=all chromosomes".

That means download a whole genome as one big file.

4. Create and load some .bam files into the DAS/2 server.

5. Test the .bam files using Galaxy.