Monday, August 16, 2010

FASTQ Quality Data

python>qa = '!''*((((***+))%%%++)(%%%%).1***-+*''))**55CCF>>>>>>CCCCCCC65.....'

python>quality_score = [ord(q)-33 for q in qa]

python>print quality_score

[0, 9, 7, 7, 7, 7, 9, 9, 9, 10, 8, 8, 4, 4, 4, 10, 10, 8, 7, 4, 4, 4, 4, 8, 13, 16, 9, 9, 9, 12, 10, 9, 8, 8, 9, 9, 20, 20, 34, 34, 37, 29, 29, 29, 29, 29, 29, 34, 34, 34, 34, 34, 34, 34, 21, 20, 13, 13, 13, 13, 13]

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