Wednesday, December 29, 2010

install srma

Short Read Micro re-Aligner



#sync
git clone git://srma.git.sourceforge.net/gitroot/srma/srma srma
cd srma
cd c-code

#samtools must be present as a subfolder to compile srma.
svn co https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools samtools
cd samtools;make
cd ..
sh autogen.sh && ./configure && make

#if goes well, you will see a binary "srma"
./srma

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