Friday, June 17, 2011

Call SNP & Indel

java -Xmx32g -jar GenomeAnalysisTK.jar -T UnifiedGenotyper -R hg19.fasta -B:dbsnp,VCF dbsnp132.human.vcf -glm BOTH -o X1.vcf -I X1.bam -l INFO -stand_call_conf 20 -stand_emit_conf 10


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