Thursday, March 1, 2012

R, DESeq and qvalue installation

wget http://cran.cnr.berkeley.edu/src/base/R-2/R-2.14.2.tar.gz
tar -zxvf R-2.14.2.tar.gz
cd R-2.14.2;./configure --prefix=/home/R-2.14.2;make;make install
cd /home/R-2.14.2/bin

wget http://genomics.princeton.edu/storeylab/qvalue/qvalue_1.1.tar.gz
./R CMD INSTALL qvalue_1.1.tar.gz
rm -f qvalue_1.1.tar.gz

source("http://www.bioconductor.org/biocLite.R")
biocLite("DESeq")

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